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  1. sigvar::all_sig_pal
    Color palette for mutational signatures analyzed in the study by Morrison et al.
  2. sigvar::carcinogens_mice_SBS
    Single base substitution signature attributions found in mice exposed to 20 known or suspected carcinogens.
  3. sigvar::carcinogens_mice_SBS.refs
    Reference single base substitution signatures found in mice exposed to 20 known or suspected carcinogens.
  4. sigvar::COSMIC3.0_ID
    Indel reference signatures for COSMIC3.0
  5. sigvar::COSMIC3.0_SBS
    Single base substitution reference signatures for COSMIC3.0
  6. sigvar::COSMIC3.1_CN
    Copy Number reference signatures for COSMIC3.1
  7. sigvar::COSMIC3.3_CN
    Copy Number reference signatures for COSMIC3.3
  8. sigvar::COSMIC3.3_DBS
    Double base reference signatures for COSMIC3.0
  9. sigvar::COSMIC3.3_DBS_mm10
    Mice Double base reference signatures for COSMIC3.0
  10. sigvar::COSMIC3.3_ID
    Indel reference signatures for COSMIC3.3.1
  11. sigvar::COSMIC3.3.1_SBS
    Single base substitution reference signatures for COSMIC3.3.1
  12. sigvar::COSMIC3.3.1_SBS_mm10
    Mice Single base substitution reference signatures for COSMIC3.3.1
  13. sigvar::EGFR_context_counts_ordered
    Counts of each context class for the main transcript of gene EGFR
  14. sigvar::EGFR_drivers_intogen_SBS96
    SBS96 spectrum from the intogen website for gene EGFR in lung adenocarcinomas
  15. sigvar::ESCC_countries_SBS
    Single base substitution signature attributions found in esophageal squamous cell carcinoma across countries with varying incidence.
  16. sigvar::ESCC_countries_SBS.refs
    Reference COSMIC Single base substitution signatures found in esophageal squamous cell carcinoma across countries with varying incidence.
  17. sigvar::ESCC_sig_activity
    Activity of SBS, DBS, and ID mutational signatures in a global sample of esophageal squamous cell carcinoma cases.
  18. sigvar::ESCC_sig_similarity
    Cosine similarity of SBS, DBS, and ID mutational signatures found in a global sample of esophageal squamous cell carcinoma cases.
  19. sigvar::Intogen_EGFR_LUAD
    Driver mutations from the intogen website for gene EGFR in lung adenocarcinomas
  20. sigvar::MESOMICS_CN_SBS
    Copy Number and Single Base Substitution mutational signatures for 120 malignant pleural mesothelioma from the MESOMICS cohort
  21. sigvar::mutsig_carcinogens_mice_bootstrap_p_vals
    Bootstrap p-values comparing SVA results for carcinogen-exposed murine tumors to spontaneous tumors
  22. sigvar::mutsig_carcinogens_mice_SBS
    Single Base Substitution mutational signatures for 181 mice exposed to known or suspected carcinogens
  23. sigvar::mutsig_carcinogens_mice_SBS.refs
    Definitions of murine single base substitution mutational signatures
  24. sigvar::PCAWG_SigProfiler_COSMIC_DBS
    Double Base Substitution COSMIC mutational signatures for 2780 tumors
  25. sigvar::PCAWG_SigProfiler_COSMIC_ID
    Indel COSMIC mutational signatures for 2780 tumors
  26. sigvar::PCAWG_SigProfiler_COSMIC_SBS
    Single Base Substitution COSMIC mutational signatures for 2780 tumors
  27. sigvar::radiation_sigs_morton
    Single base substitution signature attributions found in papillary thyroid carcinoma from Chernobyl incident survivors.
  28. sigvar::radiation_sigs_morton_cossim
    Cosine similarity matrix of Single base substitution signatures found in papillary thyroid carcinoma from Chernobyl incident survivors.
    matrix|13 x 13
  29. sigvar::rcc_sig_activity
    Activity of SBS, DBS, and ID mutational signatures in a global sample of renal cell carcinoma cases.
  30. sigvar::rcc_sim
    Activity of SBS, DBS, and ID mutational signatures in a global sample of renal cell carcinoma cases.
    matrix|28 x 28
  31. sigvar::sbs_palette
    Single Base Substitution COSMIC mutational signatures for 2780 tumors
  32. sigvar::Sherlock_LCINS_SBS
    Single base substitution signature attributions found in Lung cancer in never smokers.
  33. sigvar::Sherlock_LCINS_SBS.refs
    Reference COSMIC Single base substitution signatures found in Lung cancer in never smokers.
  34. sigvar::Sherlock_LCINS.metadata
    Metadata accompanying mutational signatures for lung cancer in never smokers.
  35. sigvar::smoker_sigs_chen
    Activity of Smoking, APOBEC, and Ageing mutational signatures in a sample of East Asian lung adenocarcinoma patients.
  36. sigvar::smoker_sigs_chen_cossim
    Cosine similarity of smoking, APOBEC, and ageing mutational signatures found in a sample of East Asian lung adenocarcinoma patients.
  37. sigvar::TP53_context_counts_ordered
    Counts of each context class for the main transcript of gene TP53
  38. sigvar::TP53_drivers_intogen_LUAD
    Driver mutations from the intogen website for gene TP53 in lung adenocarcinomas
  39. sigvar::TP53_drivers_intogen_SBS96
    SBS96 spectrum from the intogen website for gene TP53 in lung adenocarcinomas
  40. sigvar::zhang_sig_activity
    Activity of SBS mutational signatures in samples of lung cancer in never smokers
  41. sigvar::zhang_sig_similarity
    Cosine similarity of SBS mutational signatures found in samples of lung cancer in never smokers
    matrix|14 x 14